PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017349m
Common NameCARUB_v10017349mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 413aa    MW: 46674.5 Da    PI: 9.0233
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017349mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.97.6e-27246307159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldD+++WrKYGqKe+ +++fprsY+rCt++   gC+++k+v++ + +pk++ itY g+H+++
  Carubv10017349m 246 LDDEFSWRKYGQKEILNAKFPRSYFRCTHKftqGCKATKQVQKMELEPKMFSITYMGTHTCN 307
                      58***************************9999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-26234308IPR003657WRKY domain
SuperFamilySSF1182907.85E-24240308IPR003657WRKY domain
PROSITE profilePS5081120.197241309IPR003657WRKY domain
SMARTSM007741.1E-36246308IPR003657WRKY domain
PfamPF031061.3E-24247306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
AKFDIPFSLR DEMTSSITTS SILRHEAPQA KTKGWISLSS ISFPHTSHYL PSHFLSSSSL  60
SKKKNQTSPT TTTKKEKKKK KRSHHYKSSF PPYIYTHFSS FPLIIQTTPR EQNRKKKKKT  120
HQMDTKKALK LKAMNHQLVE GHEFATKLQQ LLSQPGSGHG LAEDLAAKIV VTFNKAISVL  180
DSFEPISSSS SSLAAVEGSQ NASCDNDGKF EDSGDSRKRL GPVKGKRGCY KRKKRAETWT  240
MHSTVLDDEF SWRKYGQKEI LNAKFPRSYF RCTHKFTQGC KATKQVQKME LEPKMFSITY  300
MGTHTCNTNT ATPTIKGCDD HQDEITMDSE EHKSPSLLTT SMKEEEENHL HHHGSSTENN  360
LVWQDLVFEE DHHHHHQAIY VCGETSQELM VFGAGGDFEF SDSIFDSCSN LC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17381KKEKKKKKR
2114126KKKKKTHQMDTKK
3116120KKKTH
4216234RKRLGPVKGKRGCYKRKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291218.10.0hypothetical protein CARUB_v10017349mg, partial
SwissprotQ9LY001e-153WRK70_ARATH; Probable WRKY transcription factor 70
TrEMBLR0FPU20.0R0FPU2_9BRAS; Uncharacterized protein (Fragment)
STRINGAT3G56400.11e-151(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-129WRKY DNA-binding protein 70